PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G142500.1
Common NameB456_001G142500, LOC105770959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 188aa    MW: 20478.2 Da    PI: 9.7832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G142500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000175072123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++Cp C+++F ++  L  H++ H
  Gorai.001G142500.1 50 FECPFCHRVFGNSQALGGHQNAH 72
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.91E-64777No hitNo description
Gene3DG3DSA:3.30.160.608.4E-44876IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2815077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAESSVPTSL SSADMTPDKQ SSLKLFGFSL TDHQEEVSDK SDDFGESRKF ECPFCHRVFG  60
NSQALGGHQN AHKRERQKAR QAQFHSRQRF IAAATPVLSS HVVRSMAPRF PRGFSTNGAA  120
KFLPQLAGDC PSCPQLLPTT PPYPTRIFMG KPLHFRTAAP GSTEVSTKLP KAEIGIDLHL  180
KLSHSGC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447798.11e-136PREDICTED: zinc finger protein JAGGED-like
TrEMBLA0A0D2PRC11e-136A0A0D2PRC1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1585447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.14e-14C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]